PHYLOViZ is available as a desktop JAVA application and also as an online application. It allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data.
All PHYLOViZ code is available in public repositories and under GPL license. Click in development above to explore it.
For representing the possible evolutionary relationships between strains, PHYLOViZ uses the goeBURST algorithm, a refinement of eBURST algorithm by Feil et al., and its expansion to generate a complete minimum spanning tree (MST).
Partly supported by INCD funded by FCT and FEDER under the project 22153-01/SAICT/2016, by other national funds also through FCT (BACGENTRACK TUBITAK/0004/2014, DATASTORM EXCL/EEI-ESS/0257/2012, NETDYN PTDC/EIA-CCO/118533/2010), and by EC funded projects (BIRDS 690941-H2020-MSCA-RISE-2015, Patho-NGen-Trace FP7-278864-2).