The main window follows always the same conventions.
Black - Link drawn without recourse to tiebreak rules
Blue - Link drawn using tiebreak rule 1 (number of SLVs)
Green - Link drawn using tiebreak rule 2 (number of DLVs)
Red - Link drawn using tiebreak rule 3 (number of TLVs)
Yellow - Link drawn using tiebreak rule 4 or 5 (Frequency found on the data set and ST number , respectively)
Gray - Links drawn at DLV (darker gray) or TLV (lighter gray) if the groups are constructed at DLV/TLV level
ST nodes colors
Light green - Group founder
Dark green - Sub-group founder
Light blue - Common node
Red - Selected node
If you hover with the mouse pointer above a node, the colors change highlighting the nodes more closely related to that node.
All single-locus variants (SLVs) of that particular ST are
indicated in orange and the double-locus variants (DLVs) in