Annotation Property: comment
http://www.w3.org/2000/01/rdf-schema#comment
Usage (319)
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http://purl.uniprot.org/core/APIcomment "Mass measurement using Atmospheric Pressure Ionization" ()
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http://purl.uniprot.org/core/Absorption_Annotationcomment "Indicates the wavelength in nm at which photoreactive proteins such as opsins and DNA photolyases show maximal absorption." (string)
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http://purl.uniprot.org/core/Active_Site_Annotationcomment "Amino acid(s) involved in the activity of an enzyme." (string)
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http://purl.uniprot.org/core/Allergen_Annotationcomment "Information relevant to allergenic proteins." (string)
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http://purl.uniprot.org/core/Alternative_Products_Annotationcomment "Description of the existence of related protein sequences produced by alternative splicing of the same gene or by the use of alternative initiation codons." (string)
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http://purl.uniprot.org/core/Alternative_Sequence_Annotationcomment "Description of sequence variants produced by alternative splicing." (string)
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http://purl.uniprot.org/core/Annotationcomment "Description of a resource on a specific topic." (string)
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http://purl.uniprot.org/core/Attributioncomment "Entity used to attach evidence or provenance to a rdf statement via reification." (en)
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http://purl.uniprot.org/core/Beta_Strand_Annotationcomment "Beta strand regions within the experimentally determined protein structure" (string)
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http://purl.uniprot.org/core/Binding_Site_Annotationcomment "Binding site for any chemical group (co-enzyme, prosthetic group, etc.)." (string)
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http://purl.uniprot.org/core/Biophysicochemical_Annotationcomment "Biophysical and physicochemical data such as pH dependence, temperature dependence, kinetic parameters, redox potentials, and maximal absorption." (string)
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http://purl.uniprot.org/core/Biotechnology_Annotationcomment "Description of the use of a specific protein in a biotechnological process." (string)
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http://purl.uniprot.org/core/Book_Citationcomment "A chapter from a book." (string)
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http://purl.uniprot.org/core/Calcium_Binding_Annotationcomment "Extent of a calcium-binding region." (string)
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http://purl.uniprot.org/core/Catalytic_Activity_Annotationcomment "Description of the reactions catalyzed by an enzyme." (string)
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http://purl.uniprot.org/core/Caution_Annotationcomment "Warning about possible errors and/or grounds for confusion." (string)
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http://purl.uniprot.org/core/Chain_Annotationcomment "Extent of a polypeptide chain in the mature protein." (string)
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http://purl.uniprot.org/core/Citationcomment "Description of a publication from which data was obtained." (string)
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http://purl.uniprot.org/core/Citation_Statementcomment "The relationship between a resource and a citation." (string)
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http://purl.uniprot.org/core/Clustercomment "Cluster of proteins with similar sequences." (string)
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http://purl.uniprot.org/core/Cofactor_Annotationcomment "Description of an enzyme cofactor." (string)
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http://purl.uniprot.org/core/Coiled_Coil_Annotationcomment "Extent of a coiled-coil region." (string)
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http://purl.uniprot.org/core/Compositional_Bias_Annotationcomment "Extent of a compositionally biased region." (string)
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http://purl.uniprot.org/core/Conceptcomment "A concept used to classify resources." (string)
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http://purl.uniprot.org/core/Cross-link_Annotationcomment "Posttranslationally formed amino acid bonds." (string)
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http://purl.uniprot.org/core/Databasecomment "Metadata for a life science database." (string)
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http://purl.uniprot.org/core/Developmental_Stage_Annotationcomment "Description of the developmentally-specific expression of a protein." (string)
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http://purl.uniprot.org/core/Disease_Annotationcomment "Description of the diseases associated with a deficiency of a protein." (string)
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http://purl.uniprot.org/core/Disulfide_Bond_Annotationcomment "Describes residues which are linked by an intra-chain disulfide bond. If the endpoints are identical, the disulfide bond is an interchain one." (string)
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http://purl.uniprot.org/core/Domain_Annotationcomment "Description of the domain structure of a protein." (string)
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http://purl.uniprot.org/core/Domain_Assignment_Statementcomment "The relationship between a protein and a protein domain." (string)
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http://purl.uniprot.org/core/Domain_Extent_Annotationcomment "Extent of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold." (string)
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http://purl.uniprot.org/core/Electron_Microscopycomment "The electron microscope is a microscope that can magnify very small details with high resolving power due to the use of electrons rather than light to scatter off material, magnifying at levels up to 500,000 times." (string)
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http://purl.uniprot.org/core/Electronic_Citationcomment "An electronic publication." (string)
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http://purl.uniprot.org/core/Endpoint_Statementcomment "Metadata for an endpoint of a range on a sequence." (string)
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http://purl.uniprot.org/core/Enzymecomment "A specific catalytic activity, defined by the Enzyme Commission of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)." (string)
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http://purl.uniprot.org/core/Enzyme_Regulation_Annotationcomment "Description of an enzyme regulatory mechanism." (string)
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http://purl.uniprot.org/core/Evidence_at_Transcript_Level_Existencecomment "Indicates that the existence of a protein has not been strictly proven but that expression data (such as existence of cDNA(s), RT-PCR or Northern blots) indicate the existence of a transcript." (string)
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http://purl.uniprot.org/core/External_Sequencecomment "The protein described in the linked record is an alternative splice form of the same gene product as described in this record. The function between the two isoforms is highly divergent." (string)
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http://purl.uniprot.org/core/Family_Membership_Statementcomment "The relationship between a protein and a protein family." (string)
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http://purl.uniprot.org/core/Function_Annotationcomment "General description of the functions of a protein." (string)
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http://purl.uniprot.org/core/Glycosylation_Annotationcomment "Describes the occurrence of the attachment of a glycan (mono- or polysaccharide) to a residue of a protein." (string)
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http://purl.uniprot.org/core/Helix_Annotationcomment "Helical regions within the experimentally determined protein structure" (string)
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http://purl.uniprot.org/core/Induction_Annotationcomment "Description of the compounds or conditions that stimulate the synthesis of a protein." (string)
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http://purl.uniprot.org/core/Infrared_Spectroscopycomment "A type of spectroscopy that uses the Infrared portion of the electromagnetic spectrum." (string)
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http://purl.uniprot.org/core/Initiator_Methionine_Annotationcomment "Indicates that the initiator methionine has been cleaved off and is not shown in the sequence." (string)
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http://purl.uniprot.org/core/Interactioncomment "Description of a protein-protein interaction." (string)
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http://purl.uniprot.org/core/Intramembrane_Annotationcomment "Extent of a region located in a membrane without crossing it" (string)
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http://purl.uniprot.org/core/Journal_Citationcomment "An article published in a journal." (string)
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http://purl.uniprot.org/core/Kinetics_Annotationcomment "Mentions the Michaelis-Menten constant (KM) and maximal velocity (Vmax) of enzymes." (string)
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http://purl.uniprot.org/core/Lipidation_Annotationcomment "Covalent binding of a lipid moiety." (string)
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http://purl.uniprot.org/core/Mass_Measurement_Methodcomment "An experimental method for measuring the mass of a molecule." (string)
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http://purl.uniprot.org/core/Mass_Spectrometry_Annotationcomment "Indicates the mass of a sequence determined by mass spectrometry." (string)
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http://purl.uniprot.org/core/Metal_Binding_Annotationcomment "Binding site for a metal ion." (string)
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http://purl.uniprot.org/core/Methodcomment "An experimental method." (string)
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http://purl.uniprot.org/core/Modification_Annotationcomment "Describes amino acid modifications, post pre- and post-translational." (string)
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http://purl.uniprot.org/core/Modified_Residue_Annotationcomment "Posttranslational modification of a residue." (string)
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http://purl.uniprot.org/core/Moleculecomment "A biological molecule." (string)
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http://purl.uniprot.org/core/Motif_Annotationcomment "Short (<=20 amino acids) sequence motif of biological interest." (string)
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http://purl.uniprot.org/core/Mutagenesis_Annotationcomment "Site which has been experimentally altered." (string)
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http://purl.uniprot.org/core/NP_Binding_Annotationcomment "Extent of a nucleotide phosphate-binding region." (string)
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http://purl.uniprot.org/core/Natural_Variant_Annotationcomment "Authors report that sequence variants exist." (string)
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http://purl.uniprot.org/core/Non-adjacent_Residues_Annotationcomment "Indicates that two residues in a sequence are not consecutive and that there are a number of unsequenced residues between them." (string)
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http://purl.uniprot.org/core/Non-standard_Residue_Annotationcomment "Describes the occurrence of a non standard residue in the sequence record." (string)
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http://purl.uniprot.org/core/Non-terminal_Residue_Annotationcomment "The residue at an extremity of the sequence is not the terminal residue." (string)
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http://purl.uniprot.org/core/NotObsoletecomment "A class introduced to group all records that are currently in the database." (string)
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http://purl.uniprot.org/core/Nucleotide_Binding_Annotationcomment "Extent of a DNA-binding region." (string)
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http://purl.uniprot.org/core/Nucleotide_Mapping_Statementcomment "The relationship between a protein and a nucleotide sequence." (string)
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http://purl.uniprot.org/core/Nucleotide_Resourcecomment "A resource that descripes a nucleotide sequence." (string)
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http://purl.uniprot.org/core/Observation_Citationcomment "Citation of an unpublished result." (string)
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http://purl.uniprot.org/core/Obsoletecomment "The class of all obsolete records in the database (i.e. records that where once published but are now removed)." (string)
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http://purl.uniprot.org/core/ObsoleteTaxoncomment "Taxa are occasionally removed from the taxonomy database (particularly internal nodes, during a taxonomic revision) – these taxids are deleted, and are not reused." (string)
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http://purl.uniprot.org/core/PDcomment "" (string)
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http://purl.uniprot.org/core/PH_Dependence_Annotationcomment "Describes the optimum pH for enzyme activity and/or the variation of enzyme activity with pH variation." (string)
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http://purl.uniprot.org/core/PTM_Annotationcomment "Description of a posttranslational modification." (string)
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http://purl.uniprot.org/core/Partcomment "Description of a part of a protein." (string)
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http://purl.uniprot.org/core/Participantcomment "A participant in a protein-protein interaction." (string)
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http://purl.uniprot.org/core/Patent_Citationcomment "A patent application." (string)
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http://purl.uniprot.org/core/Pathwaycomment "A hierarchical discription of a metabolic pathway." (string)
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http://purl.uniprot.org/core/Pathway_Annotationcomment "Description of the metabolic pathways with which a protein is associated." (string)
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http://purl.uniprot.org/core/Peptide_Annotationcomment "Extent of a released active peptide." (string)
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http://purl.uniprot.org/core/Pharmaceutical_Annotationcomment "Description of the use of a protein as a pharmaceutical drug." (string)
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http://purl.uniprot.org/core/Polymorphism_Annotationcomment "Description of polymorphisms." (string)
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http://purl.uniprot.org/core/Potentialcomment "indicates that there is some logical or conclusive evidence that the given annotation could apply. This non-experimental qualifier is often used to present results from protein sequence analysis software tools, which are only annotated if the result makes sense in the biological context of a given protein. A typical example is the annotation of N-glycosylation sites in secreted proteins" (string)
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http://purl.uniprot.org/core/Predicted_Existencecomment "This is used for proteins without evidence at protein, transcript, or homology levels." (string)
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http://purl.uniprot.org/core/Probablecomment "The status ‘Probable’ indicates stronger evidence than the qualifier ‘Potential’. This qualifier implies that there must be at least some experimental evidence, which indicates, that the information is expected to be found in the natural environment of a protein." (string)
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http://purl.uniprot.org/core/Propeptide_Annotationcomment "Extent of a propeptide." (string)
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http://purl.uniprot.org/core/Proteincomment "Description of a protein." (string)
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http://purl.uniprot.org/core/Protein_Familycomment "Desription of a set of related proteins." (string)
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http://purl.uniprot.org/core/RNA_Editing_Annotationcomment "Description of any type of RNA editing that leads to one or more amino acid changes." (string)
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http://purl.uniprot.org/core/Rangecomment "A range of amino acids on a protein sequence." (string)
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http://purl.uniprot.org/core/Rankcomment "A rank of a taxon." (string)
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http://purl.uniprot.org/core/Redox_Potential_Annotationcomment "Reports the value of the standard (midpoint) oxido-reduction potential(s) for electron transport proteins." (string)
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http://purl.uniprot.org/core/Repeat_Annotationcomment "Extent of an internal sequence repetition." (string)
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http://purl.uniprot.org/core/Resourcecomment "A life science resource." (string)
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http://purl.uniprot.org/core/Secondary_Structure_Annotationcomment "Describes the secondary structure of proteins whose tertiary structure is known experimentally." (string)
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http://purl.uniprot.org/core/Sequencecomment "An amino acid sequence." (string)
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http://purl.uniprot.org/core/Sequence_Annotationcomment "Description of a special region or site in a protein sequence." (string)
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http://purl.uniprot.org/core/Sequence_Caution_Annotationcomment "Warning about possible errors related to the protein sequence" (string)
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http://purl.uniprot.org/core/Sequence_Conflict_Annotationcomment "Different sources report differing sequences." (string)
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http://purl.uniprot.org/core/Sequence_Uncertainty_Annotationcomment "Used to describe region(s) of a sequence for which the authors are unsure about the sequence assignment." (string)
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http://purl.uniprot.org/core/Signal_Peptide_Annotationcomment "Extent of a signal sequence (prepeptide)." (string)
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http://purl.uniprot.org/core/Similarity_Annotationcomment "Description of the similarities (sequence or structural) of a protein with other proteins." (string)
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http://purl.uniprot.org/core/Site_Annotationcomment "Any interesting single amino-acid site on the sequence, that is not defined by another feature key. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids." (string)
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http://purl.uniprot.org/core/Statuscomment "Indicator for the reliability of a piece of information." (string)
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http://purl.uniprot.org/core/Straincomment "A strain of a species." (string)
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http://purl.uniprot.org/core/Structure_Determination_Methodcomment "An experimental method for determining the 3D structure of a protein." (string)
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http://purl.uniprot.org/core/Structure_Mapping_Statementcomment "The relationship between a protein and a 3D structure." (string)
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http://purl.uniprot.org/core/Structure_Resourcecomment "A resource that describes the 3D structure of a protein." (string)
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http://purl.uniprot.org/core/Structured_Namecomment "A resource that holds a set of the known names for this protein together." (string)
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http://purl.uniprot.org/core/Subcellular_Location_Annotationcomment "Description of the subcellular location of the mature protein." (string)
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http://purl.uniprot.org/core/Submission_Citationcomment "Data that was submitted directly to a database." (string)
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http://purl.uniprot.org/core/Subunit_Annotationcomment "Description of the quaternary structure of a protein." (string)
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http://purl.uniprot.org/core/Taxoncomment "An element of a taxonomy for classifying life forms." (string)
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http://purl.uniprot.org/core/Temperature_Dependence_Annotationcomment "Indicates the optimum temperature for enzyme activity and/or the variation of enzyme activity with temperature variation; the thermostability/thermolability of the enzyme is also mentioned when it is known." (string)
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http://purl.uniprot.org/core/Thesis_Citationcomment "A Ph.D. thesis." (string)
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http://purl.uniprot.org/core/Tissuecomment "A tissue such as lung or heart." (string)
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http://purl.uniprot.org/core/Tissue_Specificity_Annotationcomment "Description of the tissue specificity of a protein." (string)
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http://purl.uniprot.org/core/Topological_Domain_Annotationcomment "A topological domain." (string)
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http://purl.uniprot.org/core/Toxic_Dose_Annotationcomment "Information on the LD(50). LD stands for "Lethal Dose". LD(50) is the amount of a toxin, given all at once, which causes the death of 50% (one half) of a group of test animals." (string)
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http://purl.uniprot.org/core/Transit_Peptide_Annotationcomment "Extent of a transit peptide (mitochondrion, chloroplast, thylakoid, cyanelle or microbody)." (string)
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http://purl.uniprot.org/core/Transmembrane_Annotationcomment "Extent of a transmembrane region." (string)
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http://purl.uniprot.org/core/Transposoncomment "A transposon" (string)
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http://purl.uniprot.org/core/Turn_Annotationcomment "Turns within the experimentally determined protein structure." (string)
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http://purl.uniprot.org/core/Viral_cRNAcomment "Positive cRNA molecule that is made from from a single stranded genomic RNA." (string)
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http://purl.uniprot.org/core/X-Ray_Crystallographycomment "A technique in crystallography in which the pattern produced by the diffraction of x-rays through the closely spaced lattice of atoms in a crystal is recorded and then analyzed to reveal the nature of that lattice." (string)
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http://purl.uniprot.org/core/Zinc_Finger_Annotationcomment "Extent of a zinc finger region." (string)
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http://purl.uniprot.org/core/abstractcomment "True if the class does not have any direct instances." (string)
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http://purl.uniprot.org/core/activitycomment "The description of a catalytic activity." (string)
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http://purl.uniprot.org/core/aliascomment "An alternative name used in the flat text format." (string)
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http://purl.uniprot.org/core/allergenNamecomment "See http://www.expasy.org/cgi-bin/lists?allergen.txt" (string)
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http://purl.uniprot.org/core/alternativeNamecomment "A synonym of the recommended name." (string)
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http://purl.uniprot.org/core/annotationcomment "Attaches an annotation to a resource." (string)
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http://purl.uniprot.org/core/atypicalcomment "True if the protein is divergent in sequence or has mutated functional sites." (string)
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http://purl.uniprot.org/core/authorcomment "The author of a publication." (string)
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http://purl.uniprot.org/core/basedOncomment "The sequence on which the description of a modified sequence is based." (string)
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http://purl.uniprot.org/core/begincomment "The first position of a range." (string)
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http://purl.uniprot.org/core/biotechNamecomment "A name used in a biotechnological context." (string)
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http://purl.uniprot.org/core/cdAntigenNamecomment "A name from the Human Cell Differentiation Molecules (HCDM) nomenclature." (string)
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http://purl.uniprot.org/core/certaincomment "False if there is any uncertainty about a statement." (string)
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http://purl.uniprot.org/core/chaincomment "Maps a series of symbols representing chains of a protein to a range of amino acids." (string)
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http://purl.uniprot.org/core/checksumcomment "An caclulated value that is used to detect if there are errors in the sequence as shown due to among others IO errors. Both the crc64 and md5sum have collisions in UniProt data and cannot be used as unique keys." ()
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http://purl.uniprot.org/core/citationcomment "A publication from which data was extracted, or which contains additional information." (string)
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http://purl.uniprot.org/core/classifiedWithcomment "A concept that classifies this resource." (string)
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http://purl.uniprot.org/core/cofactorcomment "A cofactor required for a catalytic activity." (string)
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http://purl.uniprot.org/core/componentcomment "A component of a protein." (string)
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http://purl.uniprot.org/core/createdcomment "The date a resource was created." (string)
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http://purl.uniprot.org/core/domaincomment "A domain of a protein." (string)
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http://purl.uniprot.org/core/domainscomment "The number of domains in a protein that correspond to a family. This is almost always 1, but may be 2 if two identical domains are fused." (string)
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http://purl.uniprot.org/core/ecNamecomment "The ecName is the enzyme classification associated with a structured name of the protein. Proteins are often named after their enzymatic activity but can have more than one activity leading to multiple names." ()
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http://purl.uniprot.org/core/editorcomment "The editor of a publication." (string)
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http://purl.uniprot.org/core/encodedBycomment "The gene by which a protein is encoded." (string)
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http://purl.uniprot.org/core/encodedIncomment "The subcellular location where a protein is encoded." (string)
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http://purl.uniprot.org/core/endcomment "The last position of a range." (string)
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http://purl.uniprot.org/core/enzymecomment "The catalytic activity associated with a protein. or part of a protein." (string)
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http://purl.uniprot.org/core/erratumcomment "An erratum for a publication." (string)
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http://purl.uniprot.org/core/erratumForcomment "The publication which an erratum refers to." (string)
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http://purl.uniprot.org/core/falseNegativecomment "True if a statement is true even though it was not predicted." (string)
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http://purl.uniprot.org/core/fragmentcomment "Indicates if a sequence is complete or consists of one or more fragments." (string)
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http://purl.uniprot.org/core/frameshiftcomment "True if a sequence modification causes a frameshift." (string)
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http://purl.uniprot.org/core/fullNamecomment "The full name." (string)
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http://purl.uniprot.org/core/fusedcomment "True if the rule on which the membership of a protein to a family is based does not cover the entire protein." (string)
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http://purl.uniprot.org/core/groupcomment "The group or consortium that authored a publication." (string)
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http://purl.uniprot.org/core/hitscomment "The number of hits found in a sequence." (string)
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http://purl.uniprot.org/core/identitycomment "The level of sequence identity in a cluster." (string)
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http://purl.uniprot.org/core/implicitcomment "True if existance of this resource can be inferred." (string)
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http://purl.uniprot.org/core/institutioncomment "The institution at which a thesis was written." (string)
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http://purl.uniprot.org/core/internationalNonproprietaryNamecomment "The international nonproprietary name: A generic name for a pharmaceutical substance or active pharmaceutical ingredient that is globally recognized and is a public property." (string)
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http://purl.uniprot.org/core/limitcomment "True if the range does not extend beyond the specified endpoint." (string)
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http://purl.uniprot.org/core/locatedOncomment "The molecule a this resource is located on." (string)
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http://purl.uniprot.org/core/masscomment "The mass of a sequence in Daltons." (string)
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http://purl.uniprot.org/core/maximumcomment "A maximum value." (string)
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http://purl.uniprot.org/core/measuredActivitycomment "The maximum velocity, Vmax." (string)
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http://purl.uniprot.org/core/measuredAffinitycomment "The Michaelis-Menten constant, Km." (string)
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http://purl.uniprot.org/core/measuredErrorcomment "The magnitude of the error of a value that was measured." (string)
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http://purl.uniprot.org/core/measuredValuecomment "A value that was measured." (string)
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http://purl.uniprot.org/core/membercomment "One of several similar resources." (string)
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http://purl.uniprot.org/core/methodcomment "The experimental method that was used." (string)
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http://purl.uniprot.org/core/mnemoniccomment "A easy to remember identifier for a UniProtKB entry, but it is not a stable identifier and should not be used by programs to identify entries." ()
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http://purl.uniprot.org/core/modificationcomment "A modification of a sequence." (string)
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http://purl.uniprot.org/core/modifiedcomment "The date a resource was last modified." (string)
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http://purl.uniprot.org/core/obsoletecomment "True if this resource has been replaced or deleted." (string)
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http://purl.uniprot.org/core/oldMnemoniccomment "A mnemonic that is no longer in use for this entry." ()
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http://purl.uniprot.org/core/organismcomment "The organism in which a protein occurs." (string)
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http://purl.uniprot.org/core/pagescomment "The first and last page for a chapter or article." (string)
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http://purl.uniprot.org/core/partOfLineagecomment "True for taxa that can appear as part of an organism's lineage." (string)
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http://purl.uniprot.org/core/partialcomment "True if the pattern or profile on which the domain assignment is based did not detect the sequence because the sequence is not complete and lacks the region on which the pattern or profile is based." (string)
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http://purl.uniprot.org/core/participantcomment "A protein that participates in a protein-protein interaction." (string)
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http://purl.uniprot.org/core/patterncomment "A URL pattern, used to generate links by substituting an identifier." (string)
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http://purl.uniprot.org/core/placecomment "The place where a publication was published. This usually includes a country name." (string)
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http://purl.uniprot.org/core/positioncomment "A position on a sequence." (string)
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http://purl.uniprot.org/core/publishercomment "The publisher of a book." (string)
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http://purl.uniprot.org/core/rangecomment "A range of amino acids." (string)
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http://purl.uniprot.org/core/rankcomment "The rank of a taxon." (string)
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http://purl.uniprot.org/core/recommendedNamecomment "The name recommended by the UniProt consortium." (string)
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http://purl.uniprot.org/core/replacedBycomment "A resource that replaces this resource." (string)
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http://purl.uniprot.org/core/replacescomment "A resource that is replaced by this resource." (string)
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http://purl.uniprot.org/core/resolutioncomment "The resolution of an experiment, in Angstrom." (string)
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http://purl.uniprot.org/core/reviewedcomment "Indicates whether a resource has been reviewed by a curator." (string)
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http://purl.uniprot.org/core/scopecomment "The extent of the work carried out by the authors of a publication." (string)
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http://purl.uniprot.org/core/sequencecomment "An amino acid sequence." (string)
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http://purl.uniprot.org/core/sequenceForcomment "A resource that describes this sequence." (string)
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http://purl.uniprot.org/core/shortNamecomment "An abbreviation of the full name or an acronym." (string)
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http://purl.uniprot.org/core/statuscomment "The reliability of a statement." (string)
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http://purl.uniprot.org/core/structuredNameTypecomment "All names of the protein, from commonly used to obsolete, to used in the literature.." ()
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http://purl.uniprot.org/core/submittedNamecomment "A name provided by the submitter of the underlying nucleotide sequence." (string)
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http://purl.uniprot.org/core/submittedTocomment "The database a resource was submitted to." (string)
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http://purl.uniprot.org/core/substitutioncomment "A replacement sequence." (string)
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http://purl.uniprot.org/core/titlecomment "The title of a publication." (string)
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http://purl.uniprot.org/core/volumecomment "The volume a publication is part of." (string)
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http://rest.phyloviz.net/ontology#Allelecomment "An Allele is one of multiple forms of a genetic locus. Most of the sequence based typing methods rely on the diferent allelic forms of one or more genetic locus (see Locus) to provide a descrimination criteria of isolates at the species or subspecies level.
An observable variant of a locus." (string)
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http://rest.phyloviz.net/ontology#FragmentSizeBasedcomment "FragmentSizeBased refers to all typing methods where the allele determination is based on fragment sizes rather than its sequence." (string)
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http://rest.phyloviz.net/ontology#Genotypiccomment "Genotypic characterizes all the Typing Information that is based directly on the sequence itself or properties (such as sequence length)" (string)
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http://rest.phyloviz.net/ontology#Idcomment "To Do" (string)
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http://rest.phyloviz.net/ontology#Isolatecomment "Population of microbial cells in pure culture derived from a single colony on an isolation plate and characterized by identification to the species level.
Definition adapted from
Tenover, F. C., R. D. Arbeit, R. V. Goering, P. A. Mickelsen, B. E. Murray, D. H. Persing, and B. Swaminathan. 1995. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol 33:2233-9.
and
Struelens, M. J. 1996. Consensus guidelines for appropriate use and evaluation of microbial epidemiologic typing systems. Clin Microbiol Infect 2:2- 11.
" (string)
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http://rest.phyloviz.net/ontology#Locuscomment "Locus is a specific location of a gene or DNA sequence on the chromossome. For typing purposes a locus can be defined by the pair of PCR primers that are used to amplify the desired sequence. The resulting sequence is usually trimmed by comparing it to a template sequence.
Locus for typing purpose is a position on the genome usually defined by similarity.
Locus is a named region on a genome.
" (string)
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http://rest.phyloviz.net/ontology#MLSTcomment "MLST stands for Multilocus Sequence Typing and it is a sequence based typing method that traditionally focused on the sequence of seven housekeeping loci to determine the phylogenetic relationships between strains of the same species.
The novel Whole Genome Sequencing (WGS) techniques are bringing new approaches to MLST moving from traditional 7-loci approches to schemas containing up to thousands of genes (see rMLST, wgMLST,cgMLST)
Maiden MC, Bygraves JA, Feil E et al. (March 1998). "Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms". Proc. Natl. Acad. Sci. U.S.A. 95 (6): 3140–5. doi:10.1073/pnas.95.6.3140. PMC 19708. PMID 9501229." (string)
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http://rest.phyloviz.net/ontology#MLVAcomment "MLVA stands for Multilocus Variable Number of Tandem Repeats Analysis. This method can be performed by three distinct methodologies: by running the amplified locus in a gel , using a capilary electrophoresis apparatus or sequencing the resulting amplified fragment. The first two infer the number of repeats on each locus indirectly by the fragment size. " (string)
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http://rest.phyloviz.net/ontology#MultiLocuscomment "MultiLocus characterizes all the methods based only in the characteristics (lenght or sequence ) of only two or more Locus" (string)
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http://rest.phyloviz.net/ontology#NrOfRepeatscomment "To Do" (string)
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http://rest.phyloviz.net/ontology#STAllelecomment "An MLSTAllele is an Allele (See Allele) defined in a Multilocus Sequence Typing Schema. Typically, it corresponds to a sequence of a locus of an housekeeping Gene. Each MLST_Allele has an Id that corresponds to an unique Sequence. This Id is obtained by comparing the Sequence with an online database that is the repository for the MLST Schema (see Schema). " (string)
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http://rest.phyloviz.net/ontology#Schemacomment "A Schema is the enumeration and description of a set of Locus used in a multilocus typing methodology." (string)
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http://rest.phyloviz.net/ontology#SchemaPartcomment "SchemaPart is the entity that store the index order of a given Locus on a Schema" ()
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http://rest.phyloviz.net/ontology#Sequencecomment "Sequence represents the DNA sequence of a given locus by storing its Nucleotide Sequence and/or a pointer for a file where the sequence is stored in a file system" ()
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http://rest.phyloviz.net/ontology#SequenceBasedcomment "SequenceBased refers to all typing methods based on the DNA sequence content of one or more loci." (string)
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http://rest.phyloviz.net/ontology#SequenceSizecomment "To Do" (string)
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http://rest.phyloviz.net/ontology#SingleLocuscomment "SingleLocus characterizes all the methods based only in the characteristics (lenght or sequence ) of only one Locus" ()
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http://rest.phyloviz.net/ontology#SpaAllelecomment "A SpaAllele corresponds to a specific repeat Sequence found as result of the amplification of the locus of spa gene in Staphylococcus aureus. " (string)
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http://rest.phyloviz.net/ontology#SpaRepeatcomment "SpaRepeat refers to the sequence of the repeat together with its identifier. a series of SpaRepeats and their order define a given SpaAllele and therefore a Spa type" ()
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http://rest.phyloviz.net/ontology#TypingInformationcomment "High level concept to agregate all the information relative to typing methods that have been applied to charactherize the isolate." (string)
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http://rest.phyloviz.net/ontology#VNTRAllelecomment "An MLVAAllele corresponds to the number of repeats found on a specific locus on a MLVA Schema (See Schema)." (string)
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http://rest.phyloviz.net/ontology#cgMLSTcomment "cgMLST refers to core genome MLST , a variant of MLST where the loci are core genome genes,i.e., are present in the great majority of strains of a given species" ()
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http://rest.phyloviz.net/ontology#hasAllelecomment "To Do" (string)
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http://rest.phyloviz.net/ontology#hasLocuscomment "To Do" (string)
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http://rest.phyloviz.net/ontology#hasSchemacomment "To Do" (string)
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http://rest.phyloviz.net/ontology#hasTypingcomment "To Do" (string)
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http://rest.phyloviz.net/ontology#isOfLocuscomment "To Do" (string)
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http://rest.phyloviz.net/ontology#isOfTaxoncomment "To Do" (string)
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http://rest.phyloviz.net/ontology#isOfTaxoncomment "apagar?" ()
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http://rest.phyloviz.net/ontology#isolatedAtcomment "To Do" (string)
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http://rest.phyloviz.net/ontology#rMLSTcomment "rMLST refers to ribossomal MLST, a variant of MLST technique that uses the 53 ribossomal protein genes and allow an universal characterization of bacteria from domain to strain.
Jolley KA, Bliss CM, Bennett JS, Bratcher HB, Brehony C, Colles FM, Wimalarathna H, Harrison OB, Sheppard SK, Cody AJ, Maiden MC.
Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain.
Department of Zoology, University of Oxford, Oxford, UK. keith.jolley@zoo.ox.ac.uk
" ()
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http://rest.phyloviz.net/ontology#spaTypingcomment "spaTyping is a typing method based on sequencing of the polymorphic X region of the protein A gene (spa), present in all strains of Staphylococcus aureus. The X region is constituted of a variable number of 24-bp repeats flanked by well-conserved regions.
Shopsin B, Gomez M, Montgomery SO, Smith DH, Waddington M, Dodge DE, Bost DA, Riehman M, Naidich S, Kreiswirth BN.Evaluation of protein A gene polymorphic region DNA sequencing for typing of Staphylococcus aureus strains.J Clin Microbiol. 1999 Nov;37(11):3556-63.
Harmsen D, Claus H, Witte W, Rothgänger J, Claus H, Turnwald D, Vogel U.
Typing of methicillin-resistant Staphylococcus aureus in a university hospital setting by using novel software for spa repeat determination and database management.
J Clin Microbiol. 2003 Dec;41(12):5442-8." ()
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http://rest.phyloviz.net/ontology#wgMLSTcomment "cgMLST refers to core genome MLST , a variant of MLST where the loci are core genome genes,i.e., are present in the great majority of strains of a given species" ()
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http://schema.org/Placecomment "Placeholder term to be connected to a Geographical Information Ontology
" ()
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http://xmlns.com/foaf/0.1/Agentcomment "An agent (eg. person, group, software or physical artifact)." ()
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http://xmlns.com/foaf/0.1/Documentcomment "A document." ()
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http://xmlns.com/foaf/0.1/Groupcomment "A class of Agents." ()
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http://xmlns.com/foaf/0.1/Imagecomment "An image." ()
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http://xmlns.com/foaf/0.1/LabelPropertycomment "A foaf:LabelProperty is any RDF property with texual values that serve as labels." ()
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http://xmlns.com/foaf/0.1/OnlineAccountcomment "An online account." ()
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http://xmlns.com/foaf/0.1/OnlineChatAccountcomment "An online chat account." ()
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http://xmlns.com/foaf/0.1/OnlineEcommerceAccountcomment "An online e-commerce account." ()
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http://xmlns.com/foaf/0.1/OnlineGamingAccountcomment "An online gaming account." ()
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http://xmlns.com/foaf/0.1/Organizationcomment "An organization." ()
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http://xmlns.com/foaf/0.1/Personcomment "A person." ()
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http://xmlns.com/foaf/0.1/PersonalProfileDocumentcomment "A personal profile RDF document." ()
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http://xmlns.com/foaf/0.1/Projectcomment "A project (a collective endeavour of some kind)." ()
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http://xmlns.com/foaf/0.1/accountcomment "Indicates an account held by this agent." ()
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http://xmlns.com/foaf/0.1/accountNamecomment "Indicates the name (identifier) associated with this online account." ()
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http://xmlns.com/foaf/0.1/accountServiceHomepagecomment "Indicates a homepage of the service provide for this online account." ()
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http://xmlns.com/foaf/0.1/agecomment "The age in years of some agent." ()
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http://xmlns.com/foaf/0.1/aimChatIDcomment "An AIM chat ID" ()
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http://xmlns.com/foaf/0.1/based_nearcomment "A location that something is based near, for some broadly human notion of near." ()
-
http://xmlns.com/foaf/0.1/birthdaycomment "The birthday of this Agent, represented in mm-dd string form, eg. '12-31'." ()
-
http://xmlns.com/foaf/0.1/currentProjectcomment "A current project this person works on." ()
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http://xmlns.com/foaf/0.1/depictioncomment "A depiction of some thing." ()
-
http://xmlns.com/foaf/0.1/depictscomment "A thing depicted in this representation." ()
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http://xmlns.com/foaf/0.1/dnaChecksumcomment "A checksum for the DNA of some thing. Joke." ()
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http://xmlns.com/foaf/0.1/familyNamecomment "The family name of some person." ()
-
http://xmlns.com/foaf/0.1/family_namecomment "The family name of some person." ()
-
http://xmlns.com/foaf/0.1/firstNamecomment "The first name of a person." ()
-
http://xmlns.com/foaf/0.1/focuscomment "The underlying or 'focal' entity associated with some SKOS-described concept." ()
-
http://xmlns.com/foaf/0.1/fundedBycomment "An organization funding a project or person." ()
-
http://xmlns.com/foaf/0.1/geekcodecomment "A textual geekcode for this person, see http://www.geekcode.com/geek.html" ()
-
http://xmlns.com/foaf/0.1/gendercomment "The gender of this Agent (typically but not necessarily 'male' or 'female')." ()
-
http://xmlns.com/foaf/0.1/givenNamecomment "The given name of some person." ()
-
http://xmlns.com/foaf/0.1/givennamecomment "The given name of some person." ()
-
http://xmlns.com/foaf/0.1/holdsAccountcomment "Indicates an account held by this agent." ()
-
http://xmlns.com/foaf/0.1/homepagecomment "A homepage for some thing." ()
-
http://xmlns.com/foaf/0.1/icqChatIDcomment "An ICQ chat ID" ()
-
http://xmlns.com/foaf/0.1/imgcomment "An image that can be used to represent some thing (ie. those depictions which are particularly representative of something, eg. one's photo on a homepage)." ()
-
http://xmlns.com/foaf/0.1/interestcomment "A page about a topic of interest to this person." ()
-
http://xmlns.com/foaf/0.1/isPrimaryTopicOfcomment "A document that this thing is the primary topic of." ()
-
http://xmlns.com/foaf/0.1/jabberIDcomment "A jabber ID for something." ()
-
http://xmlns.com/foaf/0.1/knowscomment "A person known by this person (indicating some level of reciprocated interaction between the parties)." ()
-
http://xmlns.com/foaf/0.1/lastNamecomment "The last name of a person." ()
-
http://xmlns.com/foaf/0.1/logocomment "A logo representing some thing." ()
-
http://xmlns.com/foaf/0.1/madecomment "Something that was made by this agent." ()
-
http://xmlns.com/foaf/0.1/makercomment "An agent that made this thing." ()
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http://xmlns.com/foaf/0.1/mboxcomment "A personal mailbox, ie. an Internet mailbox associated with exactly one owner, the first owner of this mailbox. This is a 'static inverse functional property', in that there is (across time and change) at most one individual that ever has any particular value for foaf:mbox." ()
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http://xmlns.com/foaf/0.1/mbox_sha1sumcomment "The sha1sum of the URI of an Internet mailbox associated with exactly one owner, the first owner of the mailbox." ()
-
http://xmlns.com/foaf/0.1/membercomment "Indicates a member of a Group" ()
-
http://xmlns.com/foaf/0.1/membershipClasscomment "Indicates the class of individuals that are a member of a Group" ()
-
http://xmlns.com/foaf/0.1/msnChatIDcomment "An MSN chat ID" ()
-
http://xmlns.com/foaf/0.1/myersBriggscomment "A Myers Briggs (MBTI) personality classification." ()
-
http://xmlns.com/foaf/0.1/namecomment "A name for some thing." ()
-
http://xmlns.com/foaf/0.1/nickcomment "A short informal nickname characterising an agent (includes login identifiers, IRC and other chat nicknames)." ()
-
http://xmlns.com/foaf/0.1/openidcomment "An OpenID for an Agent." ()
-
http://xmlns.com/foaf/0.1/pagecomment "A page or document about this thing." ()
-
http://xmlns.com/foaf/0.1/pastProjectcomment "A project this person has previously worked on." ()
-
http://xmlns.com/foaf/0.1/phonecomment "A phone, specified using fully qualified tel: URI scheme (refs: http://www.w3.org/Addressing/schemes.html#tel)." ()
-
http://xmlns.com/foaf/0.1/plancomment "A .plan comment, in the tradition of finger and '.plan' files." ()
-
http://xmlns.com/foaf/0.1/primaryTopiccomment "The primary topic of some page or document." ()
-
http://xmlns.com/foaf/0.1/publicationscomment "A link to the publications of this person." ()
-
http://xmlns.com/foaf/0.1/schoolHomepagecomment "A homepage of a school attended by the person." ()
-
http://xmlns.com/foaf/0.1/sha1comment "A sha1sum hash, in hex." ()
-
http://xmlns.com/foaf/0.1/skypeIDcomment "A Skype ID" ()
-
http://xmlns.com/foaf/0.1/statuscomment "A string expressing what the user is happy for the general public (normally) to know about their current activity." ()
-
http://xmlns.com/foaf/0.1/surnamecomment "The surname of some person." ()
-
http://xmlns.com/foaf/0.1/themecomment "A theme." ()
-
http://xmlns.com/foaf/0.1/thumbnailcomment "A derived thumbnail image." ()
-
http://xmlns.com/foaf/0.1/tipjarcomment "A tipjar document for this agent, describing means for payment and reward." ()
-
http://xmlns.com/foaf/0.1/titlecomment "Title (Mr, Mrs, Ms, Dr. etc)" ()
-
http://xmlns.com/foaf/0.1/topiccomment "A topic of some page or document." ()
-
http://xmlns.com/foaf/0.1/topic_interestcomment "A thing of interest to this person." ()
-
http://xmlns.com/foaf/0.1/weblogcomment "A weblog of some thing (whether person, group, company etc.)." ()
-
http://xmlns.com/foaf/0.1/workInfoHomepagecomment "A work info homepage of some person; a page about their work for some organization." ()
-
http://xmlns.com/foaf/0.1/workplaceHomepagecomment "A workplace homepage of some person; the homepage of an organization they work for." ()
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http://xmlns.com/foaf/0.1/yahooChatIDcomment "A Yahoo chat ID" ()