PHYLOViZ Core
Core classes and PHYLOViZ API. It provides the logic and glue required by all other modules.
Resources: doc; nbm; src (license).
PHYLOViZ Algorithms
This module provides reusable code and an algorithm abstraction used by other modules for making available algorithms in PHYLOViZ.
Resources: doc; nbm; src; (license).
PHYLOViZ MLST
Makes available Multi-Locus Sequence Typing in PHYLOViZ.
Resources: nbm; src (license).
PHYLOViZ MLVA
Makes available MLVA in PHYLOViZ.
Resources: nbm; src (license).
PHYLOViZ MLVA Distance
This module adds a MLVA specific distance where Euclidean distance is taken first.
Resources: nbm; src (license).
PHYLOViZ SNP
Makes available SNP analysis in PHYLOViZ.
Resources: nbm; src (license).
PHYLOViZ Aligned Sequences
Makes available aligned sequences analysis in PHYLOViZ. Sequences can be provided one per line or as FASTA.
Resources: nbm; src (license).
PHYLOViZ goeBURST
Provides an implementation of the goeBURST algorithm.
Resources: nbm; src (license).
PHYLOViZ GT Viewer
A prefuse based viewer for graphs and trees, with PHYLOViZ customizations and enhancements.
Resources: nbm; src (license).
PHYLOViZ Table/Tree Viewer
This module provides a synchronized table/tree viewer for tabular data, including filtering capabilities.
Resources: nbm; src (license).
PHYLOViZ LoadMLST DBs
This module endows PHYLOViZ with the capability of loading from MLST public repositories, typing and sequence data.
Resources: nbm; src (license).
PHYLOViZ PubMLST
This module provides a webservice client capable of loading typing/isolate data from PubMLST.
Resources: nbm; src (license).
PHYLOViZ DataStats
Computes several statistics for each data set.
Resources: nbm; src (license).
PHYLOViZ Category
An implementation of categorical filters, including a custom pie-chart visualization.
Resources: nbm.