Core classes and PHYLOViZ API. It provides the logic and glue required by all other modules.
This module provides reusable code and an algorithm abstraction used by other modules for making available algorithms in PHYLOViZ.
Makes available Multi-Locus Sequence Typing in PHYLOViZ.
Makes available MLVA in PHYLOViZ.
PHYLOViZ MLVA Distance
This module adds a MLVA specific distance where Euclidean distance is taken first.
Makes available SNP analysis in PHYLOViZ.
PHYLOViZ Aligned Sequences
Makes available aligned sequences analysis in PHYLOViZ. Sequences can be provided one per line or as FASTA.
Provides an implementation of the goeBURST algorithm.
PHYLOViZ GT Viewer
A prefuse based viewer for graphs and trees, with PHYLOViZ customizations and enhancements.
PHYLOViZ Table/Tree Viewer
This module provides a synchronized table/tree viewer for tabular data, including filtering capabilities.
PHYLOViZ LoadMLST DBs
This module endows PHYLOViZ with the capability of loading from MLST public repositories, typing and sequence data.
This module provides a webservice client capable of loading typing/isolate data from PubMLST.
Computes several statistics for each data set.
An implementation of categorical filters, including a custom pie-chart visualization.