Publications that use or cite PHYLOViZ:
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Griekspoor P, Colles FM, McCarthy ND, Hansbro PM, Ashhurst-Smith C, Olsen B, Hasselquist D, Maiden MC, Waldenström J. Marked host specificity and lack of phylogeographic population structure of Campylobacter jejuni in wild birds. Mol Ecol. 2013 Jan 29. doi: 10.1111/mec.12144. [Epub ahead of print]
Seale RB, Dhakal R, Chauhan K, Craven HM, Deeth HC, Pillidge CJ, Powell IB, Turner MS.Genotyping of dairy Bacillus licheniformis isolates by high resolution melt analysis of multiple variable number tandem repeat loci Appl Environ Microbiol. 2012 Oct;78(19):7090-7. doi: 10.1128/AEM.01817-12. Epub 2012 Aug 3.
Pérez-Losada M, Cabezas P, Castro-Nallar E, Crandall KA.Pathogen typing in the genomics era: MLST and the future of molecular epidemiology Infect Genet Evol. 2013 Jan 26. pii: S1567-1348(13)00026-9. doi: 10.1016/j.meegid.2013.01.009. [Epub ahead of print]
Pinho MD, Matos SC, Pomba C, Lübke-Becker A, Wieler LH, Preziuso S, Melo-Cristino J, Ramirez M. Multilocus sequence analysis of Streptococcus canis confirms the zoonotic origin of human infections and reveals genetic exchange with Streptococcus dysgalactiae subsp. equisimilis. J Clin Microbiol. 2013 Jan 23. [Epub ahead of print]
Martins ER, Andreu A, Melo-Cristino J, Ramirez M.Distribution of Pilus Islands in Streptococcus agalactiae That Cause Human Infections: Insights into Evolution and Implication for Vaccine Development Clin Vaccine Immunol. 2013 Feb;20(2):313-6. doi: 10.1128/CVI.00529-12. Epub 2012 Dec 26.
Kidd TJ, Ritchie SR, Ramsay KA, Grimwood K, Bell SC, Rainey PB. Pseudomonas aeruginosa Exhibits Frequent Recombination, but Only a Limited Association between Genotype and Ecological Setting PLoS One. 2012;7(9):e44199. doi: 10.1371/journal.pone.0044199. Epub 2012 Sep 6.
Seale RB, Dhakal R, Chauhan K, Craven HM, Deeth HC, Pillidge CJ, Powell IB, Turner MS. Genotyping of Present-Day and Historical Geobacillus Species Isolates from Milk Powders by High-Resolution Melt Analysis of Multiple Variable-Number Tandem-Repeat Loci Appl Environ Microbiol. 2012 Oct;78(19):7090-7. doi: 10.1128/AEM.01817-12. Epub 2012 Aug 3.
Friães A, Pinto FR, Silva-Costa C, Ramirez M, Melo-Cristino J; The Portuguese Group for the Study of Streptococcal Infections.Group A streptococci clones associated with invasive infections and pharyngitis in Portugal present differences in emm types, superantigen gene content and antimicrobial resistance BMC Microbiol. 2012 Nov 27;12(1):280.
Guillemi E, Ruybal P, Lia V, González S, Farber M, Wilkowsky SE.Multi-locus typing scheme for Babesia bovis and Babesia bigemina reveals high levels of genetic variability in strains from Northern Argentina Infect Genet Evol. 2012 Dec 31. pii: S1567-1348(12)00387-5. doi: 10.1016/j.meegid.2012.12.005
Joseph S, Forsythe SJ. Insights into the Emergent Bacterial Pathogen Cronobacter spp., Generated by Multilocus Sequence Typing and Analysis Front Microbiol. 2012;3:397. doi: 10.3389/fmicb.2012.00397. Epub 2012 Nov 22.
Crisafulli G, Guidotti S, Muzzi A, Torricelli G, Moschioni M, Masignani V, Censini S, Donati C. An extended multi-locus molecular typing schema for Streptococcus pneumoniae demonstrates that a limited number of capsular switch events is responsible for serotype heterogeneity of closely related strains from different countries Infect Genet Evol. 2013 Jan;13:151-61. doi: 10.1016/j.meegid.2012.09.008. Epub 2012 Sep 27.
van den Berg S, van Wamel WJ, Snijders SV, Ouwerling B, de Vogel CP, Boelens HA, Willems RJ, Huijsdens XW, Verreck FA, Kondova I, Heidt PJ, Verbrugh HA, van Belkum A. Rhesus Macaques (Macaca mulatta) Are Natural Hosts of Specific Staphylococcus aureus Lineages PLoS One. 2011;6(10):e26170. doi: 10.1371/journal.pone.0026170. Epub 2011 Oct 20.