Sample Datasets

Here you can find sample files correctly formatted to use with PHYLOViZ software.

You can download the files by right clicking on the link and selecting the "Save link as" option

MLST - MultiLocus Sequence Typing

Data from Streptococcus dysgalactiae subspecies equisimilis from the publication :

David J. McMillan, Debra E. Bessen2, Marcos Pinho, Candace Ford, Gerod S. Hall, José Melo-Cristino, Mário Ramirez (2010) Population Genetics of Streptococcus dysgalactiae Subspecies equisimilis Reveals Widely Dispersed Clones and Extensive Recombination. PLoS ONE 5(7): e11741. doi:10.1371/journal.pone.0011741

Alellic profile Data
Isolate Data

The MLST Allelic profile can contain any number of loci.

MLVA - MultiLocus Variable Number of Tandem Repeats Analysis

Data from Brucella spp. from the publication: Maquart M, Le Flèche P, Foster G, Tryland M, Ramisse F, Djønne B, Al Dahouk S, Jacques I, Neubauer H, Walravens K, Godfroid J, Cloeckaert A, Vergnaud G.(2009) MLVA-16 typing of 295 marine mammal Brucella isolates from different animal and geographic origins identifies 7 major groups within Brucella ceti and Brucella pinnipedialis. BMC Microbiol Jul 20;9:145

Alellic profile Data
Isolate Data

Thess files were adapted from the article's supplemental material file in Excel format. You can find it here.

The MLVA Allelic profile can contain any number of loci, and the allele identifiers can be non-integers representing any partial repeats found.

SNP - Single Nucleotide Polymorphism

The SNP datasets provided in this pages are simulated and do not represent real data. Their purpose is to demonstrate PHYLOViZ's capabilities of handling SNP data, either in binary form (presence or absence of a bi-allelic SNP) or the nucleotide represented in the SNP

43 Samples with 14 SNPs
400 Samples with 200 SNPs
48 Samples with 10 SNPs